# svn $Id: my_build_paths.sh 943 2019-01-31 23:21:29Z arango $ #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: # Copyright (c) 2002-2019 The ROMS/TOMS Group ::: # Licensed under a MIT/X style license ::: # See License_ROMS.txt ::: #::::::::::::::::::::::::::::::::::::::::::::::::::::: Hernan G. Arango ::: # ::: # ROMS/TOMS Customized Compiling Libraries Script ::: # ::: # This C-shell script sets the customized library paths needed by the ::: # build script when the enviromental variable USE_MY_LIBS has a 'yes' ::: # value. ::: # ::: # For example, in build_roms.sh we have: ::: # ::: # if ($USE_MY_LIBS == 'yes') then ::: # source ${COMPILERS}/my_build_paths.sh ::: # endif ::: #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: set separator = `perl -e "print ':' x 100;"` echo "" echo "${separator}" echo "Using customized library paths from: $1" echo "${separator}" echo "" #-------------------------------------------------------------------------- # Add MPI library to compile. #-------------------------------------------------------------------------- # # Recall also that the MPI library comes in several flavors: # MPICH, MPICH2, OpenMPI, etc. # There are several MPI libraries available (MPICH, MPICH2, OpenMPI, # etc.). Here, we set the desired "mpif90" script to use during # compilation. This only works if the make configuration file (say, # Linux-ifort.mk) in the "Compilers" directory has the following # definition for FC (Fortran Compiler) in the USE_MPI section: # # FC := mpif90 # # that is, "mpif90" defined without any path. Notice that the path # where the MPI library is installed is computer dependent. Recall # that you still need to use the appropriate "mpirun" to execute. # # Some models like COAMPS need to know where the include file # "mpif.h" is located. setenv MPI_ROOT "" if ($?USE_MPIF90) then switch ($FORT) case "ifort" if ($which_MPI == "mpich" ) then setenv MPI_ROOT /opt/intelsoft/mpich else if ($which_MPI == "mpich2" ) then setenv MPI_ROOT /opt/intelsoft/mpich2 else if ($which_MPI == "openmpi" ) then setenv MPI_ROOT /opt/intelsoft/openmpi else if ($which_MPI == "mvapich2" ) then setenv MPI_ROOT /opt/intelsoft/mvapich2 endif setenv PATH ${MPI_ROOT}/bin:$PATH setenv MPI_INCDIR ${MPI_ROOT}/include breaksw case "pgi" if ($which_MPI == "mpich" ) then setenv MPI_ROOT /opt/pgisoft/mpich else if ($which_MPI == "mpich2" ) then setenv MPI_ROOT /opt/pgisoft/mpich2 else if ($which_MPI == "openmpi" ) then setenv MPI_ROOT /opt/pgisoft/openmpi else if ($which_MPI == "mvapich2" ) then setenv MPI_ROOT /opt/pgisoft/mvapich2 endif setenv PATH ${MPI_ROOT}/bin:$PATH setenv MPI_INCDIR ${MPI_ROOT}/include breaksw case "gfortran" if ($which_MPI == "mpich2" ) then setenv MPI_ROOT /opt/gfortransoft/mpich2 else if ($which_MPI == "openmpi" ) then setenv MPI_ROOT /opt/gfortransoft/openmpi else if ($which_MPI == "mvapich2" ) then setenv MPI_ROOT /opt/gfortransoft/mvapich2 endif setenv PATH ${MPI_ROOT}/bin:$PATH setenv MPI_INCDIR ${MPI_ROOT}/include breaksw endsw endif #-------------------------------------------------------------------------- # Set libraries to compile and link. #-------------------------------------------------------------------------- # # The path of the libraries required by ROMS can be set here using # environmental variables which take precedence to the values # specified in the make macro definitions file (Compilers/*.mk). # For most applications, only the location of the NetCDF library # is needed during compilation. # # Notice that when the USE_NETCDF4 macro is activated, we need the # serial or parallel version of the NetCDF-4/HDF5 library. The # configuration script NF_CONFIG (available since NetCDF 4.0.1) # is used to set up all the required libraries according to the # installed options (openDAP, netCDF4/HDF5 file format). The # parallel library uses the MPI-I/O layer (usually available # in MPICH2 and OpenMPI) requiring compiling with the selected # MPI library. # # In ROMS distributed-memory applications, you may use either the # serial or parallel version of the NetCDF-4/HDF5 library. The # parallel version is required when parallel I/O is activated # (ROMS cpp option PARALLEL_IO and HDF5). # # However, in serial or shared-memory ROMS applications, we need # to use the serial version of the NetCDF-4/HDF5 to avoid conflicts # with the compiler. We cannot activate MPI constructs in serial # or shared-memory ROMS code. Hybrid parallelism is not possible. setenv MPI_SOFT "" switch ($FORT) # Intel Compiler: case "ifort" setenv ESMF_COMPILER intelgcc # setenv ESMF_COMPILER intel if ($?USE_DEBUG) then setenv ESMF_BOPT g else setenv ESMF_BOPT O endif setenv ESMF_ABI 64 setenv ESMF_COMM ${which_MPI} setenv ESMF_SITE default setenv ARPACK_LIBDIR /opt/intelsoft/serial/ARPACK if ($?USE_MPI) then if ($which_MPI == "mpich" ) then setenv MPI_SOFT /opt/intelsoft/mpich else if ($which_MPI == "mpich2" ) then setenv MPI_SOFT /opt/intelsoft/mpich2 else if ($which_MPI == "openmpi" ) then setenv MPI_SOFT /opt/intelsoft/openmpi else if ($which_MPI == "mvapich2" ) then setenv MPI_SOFT /opt/intelsoft/mvapich2 endif setenv MCT_INCDIR ${MPI_SOFT}/mct/include setenv MCT_LIBDIR ${MPI_SOFT}/mct/lib setenv PARPACK_LIBDIR ${MPI_SOFT}/PARPACK endif if ($?USE_NETCDF4) then if ($?USE_PARALLEL_IO && $?USE_MPI) then setenv ESMF_DIR ${MPI_SOFT}/esmf_nc4 setenv NETCDF ${MPI_SOFT}/netcdf4 setenv NF_CONFIG ${NETCDF}/bin/nf-config setenv NETCDF_INCDIR ${NETCDF}/include setenv NETCDF4 1 else setenv ESMF_DIR ${MPI_SOFT}/esmf_nc4 setenv NETCDF /opt/intelsoft/serial/netcdf4 setenv NF_CONFIG ${NETCDF}/bin/nf-config setenv NETCDF_INCDIR ${NETCDF}/include setenv NETCDF4 1 endif else setenv ESMF_DIR ${MPI_SOFT}/esmf_nc3 setenv NETCDF /opt/intelsoft/serial/netcdf3 setenv NETCDF_INCDIR ${NETCDF}/include setenv NETCDF_LIBDIR ${NETCDF}/lib endif if ($?USE_HDF5) then if ($?USE_PARALLEL_IO && $?USE_MPI) then setenv HDF5 ${MPI_SOFT}/hdf5 setenv HDF5_LIBDIR ${HDF5}/lib setenv HDF5_INCDIR ${HDF5}/include else setenv HDF5 /opt/intelsoft/serial/hdf5 setenv HDF5_LIBDIR ${HDF5}/lib setenv HDF5_INCDIR ${HDF5}/include endif endif breaksw # PGI Compiler: case "pgi" setenv ESMF_COMPILER pgi if ($?USE_DEBUG) then setenv ESMF_BOPT g else setenv ESMF_BOPT O endif setenv ESMF_ABI 64 setenv ESMF_COMM ${which_MPI} setenv ESMF_SITE default setenv ARPACK_LIBDIR /opt/pgisoft/serial/ARPACK if ($?USE_MPI) then if ($which_MPI == "mpich" ) then setenv MPI_SOFT /opt/pgisoft/mpich else if ($which_MPI == "mpich2" ) then setenv MPI_SOFT /opt/pgisoft/mpich2 else if ($which_MPI == "openmpi" ) then setenv MPI_SOFT /opt/pgisoft/openmpi else if ($which_MPI == "mvapich2" ) then setenv MPI_SOFT /opt/pgisoft/mvapich2 endif setenv MCT_INCDIR ${MPI_SOFT}/mct/include setenv MCT_LIBDIR ${MPI_SOFT}/mct/lib setenv PARPACK_LIBDIR ${MPI_SOFT}/PARPACK endif if ($?USE_NETCDF4) then if ($?USE_PARALLEL_IO && $?USE_MPI) then setenv ESMF_DIR ${MPI_SOFT}/esmf_nc4 setenv NETCDF ${MPI_SOFT}/netcdf4 setenv NF_CONFIG ${NETCDF}/bin/nf-config setenv NETCDF_INCDIR ${NETCDF}/include setenv NETCDF4 1 else setenv ESMF_DIR ${MPI_SOFT}/esmf_nc4 setenv NETCDF /opt/pgisoft/serial/netcdf4 setenv NF_CONFIG ${NETCDF}/bin/nf-config setenv NETCDF_INCDIR ${NETCDF}/include setenv NETCDF4 1 endif else setenv ESMF_DIR ${MPI_SOFT}/esmf_nc3 setenv NETCDF /opt/pgisoft/serial/netcdf3 setenv NETCDF_INCDIR ${NETCDF}/include setenv NETCDF_LIBDIR ${NETCDF}/lib setenv NETCDF_classic 1 endif if ($?USE_HDF5) then if ($?USE_PARALLEL_IO && $?USE_MPI) then setenv HDF5 ${MPI_SOFT}/hdf5 setenv HDF5_LIBDIR ${HDF5}/lib setenv HDF5_INCDIR ${HDF5}/include else setenv HDF5 /opt/pgisoft/serial/hdf5 setenv HDF5_LIBDIR ${HDF5}/lib setenv HDF5_INCDIR ${HDF5}/include endif endif breaksw # GNU Compiler: case "gfortran" setenv ESMF_COMPILER gfortran if ($?USE_DEBUG) then setenv ESMF_BOPT g else setenv ESMF_BOPT O endif setenv ESMF_ABI 64 setenv ESMF_COMM ${which_MPI} setenv ESMF_SITE default setenv ARPACK_LIBDIR /opt/gfortransoft/serial/ARPACK if ($?USE_MPI) then if ($which_MPI == "mpich2" ) then setenv MPI_SOFT /opt/gfortransoft/mpich2 else if ($which_MPI == "openmpi" ) then setenv MPI_SOFT /opt/gfortransoft/openmpi else if ($which_MPI == "mvapich2" ) then setenv MPI_SOFT /opt/gfortransoft/mvapich2 endif setenv MCT_INCDIR ${MPI_SOFT}/mct/include setenv MCT_LIBDIR ${MPI_SOFT}/mct/lib setenv PARPACK_LIBDIR ${MPI_SOFT}/PARPACK endif if ($?USE_NETCDF4) then if ($?USE_PARALLEL_IO && $?USE_MPI) then setenv ESMF_DIR ${MPI_SOFT}/esmf_nc4 setenv NETCDF ${MPI_SOFT}/netcdf4 setenv NF_CONFIG ${NETCDF}/bin/nf-config setenv NETCDF_INCDIR ${NETCDF}/include setenv NETCDF4 1 else setenv ESMF_DIR ${MPI_SOFT}/esmf_nc4 setenv NETCDF /opt/gfortransoft/serial/netcdf4 setenv NF_CONFIG ${NETCDF}/bin/nf-config setenv NETCDF_INCDIR ${NETCDF}/include setenv NETCDF4 1 endif else setenv ESMF_DIR ${MPI_SOFT}/esmf_nc3 setenv NETCDF /opt/gfortransoft/serial/netcdf3 setenv NETCDF_INCDIR ${NETCDF}/include setenv NETCDF_LIBDIR ${NETCDF}/lib setenv NETCDF_classic 1 endif if ($?USE_HDF5) then if ($?USE_PARALLEL_IO && $?USE_MPI) then setenv HDF5 ${MPI_SOFT}/hdf5 setenv HDF5_LIBDIR ${HDF5}/lib setenv HDF5_INCDIR ${HDF5}/include else setenv HDF5 /opt/gfortransoft/serial/hdf5 setenv HDF5_LIBDIR ${HDF5}/lib setenv HDF5_INCDIR ${HDF5}/include endif endif breaksw endsw