Objective
Explore the suitability and limitation of the shallow water equations approximation for the internal solitary waves propagation.
Internal waves in the ocean
Waves under the sea level-internal waves
Problem description
With the Boussinesq approximation, the incompressible, nonhydrostatic equations in a Cartesian reference frame become,
for momentum,
for continuity,
for density
ρ(x,y,z,t)=ρ0+ρ'(x,y,z,t) for for constant ρ0, with
U=(u,v,w) the components of the velocity, and the vector
g=(0,0,-1)g with constant gravity acceleration g.
The initial model density
ρ(x,y,z,t=0) = ρ0 + ρ'(x,y,z) is set
with
ρ0 = 1000.0 kg/m^3, and

where,

where x is the distance from the left hand edge of the domain.

Fig. 1 Experimental and model set-up. Horizontal dashed line is initial undisturbed
centre of the pycnocline, with solid line illustrating initial conditions for model
perturbed pycnocline. Slope gradient is
"s" , such that s= H/LS= d-/L. For reference,
horizontal distance from slope bottom to left hand domain edge is LR.
To be able to explore the parameter space and to be able to provide comparison with other model solutions, we defined a "standard run" . A "standard run" will use constant viscosity and diffusivity values of 1.0 * 10-6 m2s-1 . In this case, with H= 0.15m.
The standard model test runs are initialised using the parameters describing model experiment (d) in Table 1, in particular having a slope of 0.217, and an initial pycnocline depth of zi=0.024m below the upper rigid lid of the model.

Table 1 Initial conditions for eight test model experiments. For each of these model
experiments H = 0.15 m, LR = 0.05 m (see Fig. 1),
ρ0 = 1000 kg/m^3, and ai = 0.027 m, Δρ= 47.0kg/m^3, Δh=0.0035m, d+ = zi, and d-= 0.15 - zi . Pairs of experiments differ only in their initial zi value, which changes
subsequent a0 and λ model values.
For example, 
In this case, Δρ=
47.0kg/m^3, zi=0.024m, Δh=0.0035m, d+ = zi, and d-= 0.15 - zi,
H = 0.15 m, LR = 0.05 m. (MATLAB file)
Benchmark outputs

Table 2 Model conditions for five selected experiment numbers (in brackets) from Michallet
and Ivey (1999). For each of these model experiments H=0.15 m, LR
=1.0 m, ρ0 =1000 kg/ m^3.
Parameter definition:
Slope = H/Ls = d-/L (see the sketch in Fig. 1); zi: a distance below the top of the domain
(see the sketch in Fig. 1); Δρ: the
change in density across the pycnocline; a0: the amplitude of ISW; Lw: characteristic
length; ξ(x)= 2aisech2(x/2W)

Table 3 Experimental data for five selected experiment numbers from Michallet and Ivey
(1999). Variation in experimental Iribaren number ξ is based on range of internal
wave amplitudes a0, and a 5% error estimate in Lw by Michallet and Ivey (1999).
Parameter definition: a0: internal wave amplitude,
Lw: characteristic length, ξ(x)= 2aisech2(x/2W)

Fig.2 Decrease of wave energy (E/Ei) against the normalized traveled distance x/H(h2/H)2 for waves propagating at constant depth.
The instantaneous wave energy E relative to the initial wave engergy Ei, as a functioin of the normalized traveled distance that is, x/H(h2/H)2 [note that the waves were free to reflect at each end of the tank and that one flume length corresponds to x/H(h2/H)2 ≒10]. The average energy lost across one flume length is roughly 0.01 J/m^2. Figure 2 also shows the wave energy lost in the model during the propagation of an ISW in a channel of constant depth using free-slip sidewalls (run 2a in Table 1). In this model setup, the energy loss is caused by bottom friction and interfacial shear. The wave energy lost in the model during wave propagation over the length of one flume is roughly 10 times less than in the laboratory. Since the model has been set up to mimic the laboratory scales, we infer that there must be a dissipative mechanism in the laboratory that is not included in this model configuration.

Fig.3 Breaking location (criterion) as a function of λ.
Parameter definition:
λ=(kL)-1, k-1= sqrt( 4(d+d-)^2
/ 3(d+ - d-)a0 )

Fig.4 Reflection coefficient R against Iribarren number ξ for the dots (model) and Michallet and Ivey (1999) experiments (crosses). Size of boxes and crosses at each point indicate estimated error bounds. The bold curve is the best fit to model by Bourgault and Kelley (2007) for the free slip sidewalls.
Energy reflectance
The energy reflectance "R", R = ER/E0, where E0 and
ER are the energy fluxes measured at the base of the slope for the initial incoming and first reflected waves, respectively.
The wave energies E0 and ER were calculated as a time integral of the depth-integrated energy flux F at the base of the slope, that is, with

where the intervals [t1, t2] and [t3, t4] are chosen visually to include the entire wave period, as illustrated below. Similar to Helfrich (1992), the depth-integrated energy flux is calculated as

where p is the wave-induced pressure, and u and w are horizontal and vertical velocity components. Figure 5 shows the time series for F. The peak centered around t=9.5 s is the energy flux of the incoming wave. The trough centered around t= 23 s is the reflected wave energy flux. The second peak and trough centered around t= 43 s and t= 60 s respectively represent the second shoaling due to wave reflection at the generation side, which is disregarded in
the following analysis. For this case E0 was computed by integrating F from t1=5±2 s to t2=15±2 s and ER from t3=17±2 s to t4=38±2 s. The error associated with the integration limits leads to an uncertainty in ER/E0 of 5%.
The reflectance provides an important measure of the likely amount of mixing induced by the breaking of these waves, and scaling their behaviour for parameterisation in larger and climate scale models remains relevant.
To validate their model, Bourgault and Kelley (2007) compared the dependence of their model R in terms of the Iribarren number (Iribarren and Nogales (1949) ξ , where ξ= s / sqrt(a0/Lw), where s is the slope, for the Michallet and Ivey (1999) experiments. Bourgault and Kelley (2007) found their free slip sidewall model R values are typically 0.1 larger than the equivalent experimental values.
In terms of the free slip sidewall runs, Bourgault and Kelley (2007) performed a curve fit to their results and obtained a parameterisation of the form, R = 1 - exp(-ξ/ξ0)where a least squares fit returns ξ0 = 0.78
±0.02.
The results from the Gerris experiments are summarised in
Fig. 4 showing R as a function of ξ.

Fig.5. Time series of the depth-integrated wave energy flux F computed at the base of the slope
Mathematical model
Sample computations
References
Experiments
Other relevent references